Vaibhav Kulkarni
Bioinformatics Researcher & Analyst
M.Sc. in Biology (Bioinformatics). I build reproducible workflows and turn complex research data into clear, validated decisions for scientific, clinical, and business teams.
Hello, I’m
About Me
I am a bioinformatics researcher and data analyst with an M.Sc. in Biology (Bioinformatics), completed at the University of Ottawa in March 2026.
My work combines Python, R, and Bash with Linux/HPC workflows to analyze genomic data, automate quality checks, document decisions, and produce reproducible results. Across 180 metagenomes, I improved recurring NGS processing efficiency by more than 90% through parallelized, reusable workflows.
I bring the same discipline to clinical research and business analysis: clarifying requirements, validating data, tracing issues, documenting processes, and communicating with technical and non-technical collaborators. My SQL and Power BI experience is project-based, complemented by hands-on scientific research, laboratory instruction, and stakeholder-facing web and data tools.
Core research and analysis capabilities:- Python
- R
- Bash & Linux
- Bioinformatics & NGS
- HPC & SLURM
- Data QA & Reproducibility
- Git & Technical Documentation
- SQL
- Power BI
Experience
Jan 2023 - Mar 2026
Investigated viral diversity, evolutionary relationships, and geographical bias in reference databases.
- Analyzed 180 metagenomes using Python, R, Bash, and Linux/HPC workflows.
- Redesigned recurring NGS workflows around reusable components, parallel execution, and automated checks, improving processing efficiency by more than 90%.
- Documented data provenance, dependencies, validation decisions, limitations, and corrective actions using Git-based practices.
- Communicated findings through an M.Sc. thesis, manuscript, and Ottawa-Carleton Biology Symposium presentations.
2023 - 2025
Supported more than 80 students per term in protocol-driven laboratory settings.
- Demonstrated experimental procedures, investigated technical issues, and reinforced safety and quality standards.
- Evaluated more than 300 laboratory reports for scientific accuracy, clarity, and adherence to requirements.
- Adapted complex scientific guidance for students with varied technical backgrounds.
Sep 2022 - Apr 2023
Investigated histone modifications in goldfish exposed to chronic hypoxia, combining wet-lab work with structured data review.
- Refined sample-handling procedures to reduce contamination risk and improve reproducibility.
- Investigated data inconsistencies, documented corrective actions, and maintained accurate experimental records.
- Presented findings in an honours thesis and departmental research setting.
June 2017 - Nov 2019
Developed and delivered personalized tutoring sessions for high school and college students in biology and chemistry.
- Customized Learning Plans: Assessed individual learning styles and academic goals to create tailored educational plans that addressed cognitive diversity and improved engagement.
- Learning Outcome Optimization: Boosted student performance by adapting instructional methods based on student progress, achieving measurable improvements in exam scores for 80% of students.
- Skill Development: Mentored students to develop critical thinking, problem-solving skills, and subject mastery in preparation for standardized exams and college admissions.
- Feedback and Improvement: Conducted regular assessments and provided detailed feedback to students and parents, adjusting study plans to continuously enhance learning outcomes.
- Use of Technology: Incorporated digital tools like interactive simulations and virtual labs to make learning more engaging and accessible.
Sep 2019 - Present
- Squat: 125 kg (275 lbs) — Consistently working on improving leg strength, focusing on proper technique and controlled depth.
- Deadlift: 143 kg (315 lbs) — Achieved personal bests through progressive overload training and technique refinement.
- Bench Press: 98 kg (215 lbs) — Focused on increasing upper body strength and chest development with consistent training.
- Overhead Press: 34 kg (75 lbs) — Continuously working on shoulder stability and pressing strength.
Education
Master of Science in Biology (Bioinformatics)
University of Ottawa2023 - 2026
Completed an M.Sc. thesis on viral genomics, phylogenetics, and geographical bias in reference databases.
- Analyzed 180 metagenomes using reproducible Python, R, Bash, and Linux/HPC workflows.
- Applied data validation, provenance tracking, workflow automation, and scientific reporting throughout the research lifecycle.
- Presented the work at the Ottawa-Carleton Biology Symposium in two consecutive years and developed it into a thesis and manuscript.
Honours Bachelor of Science in Biology
University of Ottawa2019 - 2023
Graduated magna cum laude in the Cellular and Molecular Biology option.
- Completed an honours thesis on histone modifications in goldfish exposed to chronic hypoxia.
- Built a foundation in molecular biology, quantitative analysis, experimental design, and scientific communication.
Projects
Python
R
Bash
Linux/HPC
Viral Genomics & Phylogenetics Workflow
Built a reproducible workflow to process and analyze 180 metagenomes for viral diversity, phylogenetics, and reference-database bias. Parallel execution and automated checks improved recurring NGS processing efficiency by more than 90% while preserving traceability.
Hugo
JavaScript
GitHub Actions
Research Portfolio & Data Tools
Designed and deployed this Hugo-based research portfolio with browser-based tools for sequence analysis, CSV data profiling, and decision support. GitHub Actions provides a documented, repeatable deployment workflow.
JavaScript
Google Cloud APIs
Data Visualization
Research Field Operations Mapping App
Translated university field-trip and research logistics needs into a mobile-friendly mapping application using Google Maps, Places, and Geocoding APIs. Automated recurring data updates and documented the workflow to support reliable routing, location visualization, and metadata review.
Achievements
Dean's Honour List (Recognition of Excellence)
Recognized for academic excellence through disciplined research and coursework at the University of Ottawa.
Ottawa-Carleton Biology Symposium Presentations
Presented research in two consecutive years of my M.Sc., communicating work on epigenetics and geographical bias in viral reference databases to broad scientific audiences.
Graduate Representative - Equity, Diversity, and Inclusion Committee
Elected as a graduate representative at the University of Ottawa to promote equitable academic policies and foster inclusivity.
Professional Development Officer - Biology Graduate Students' Association (BGSA)
Elected as the Professional Development Officer for the BGSA, leading workshops on career planning and academic development for graduate students.
Get in Touch
I am open to bioinformatics, clinical research, research data, and business analysis opportunities in Ontario. Contact me to discuss research, data quality, workflow improvement, or analytical projects.